CORE is my own sole proprietorship which I started specifically to collaborate with other researchers in an efficient manner.
Being now a one-man company I am eager to aid others with my experience and particular set of skills.
My expertise comprises:
computational (reproducible) research techniques: version control hooks, unit and integration testing, automatic documentation,
software packaging, automatic deployment, CI/CD, developer's environment setup, High Performance Computing (HPC),
metadata annotation, containerization, large-scale computational workflows, code revision
code optimisation: algorithmic improvement, partial or full reimplementation, codebase refactoring
machine learning, statistics & data analysis:
orthodox statistical inference, bayesian modeling (maximum likelihood optimisation), classical ML methods,
exploratory data analysis, data processing including cleanup, aggregation, visualization and reporting
bioinformatics & computational biology (mostly transcriptomics):
RNA-Seq data processing, gene/isoform expression analyses, term & pathway enrichments, differential expression analyses,
splicing and poladenylation related analyses with target detection etc.
project management in computational research: GitHub and GitLab
setting up a computational side for a research group
I offer computational aid in specific projects as well as seminars and training sessions to both individual researchers and research groups.
Wish to work with me? Drop me an e-mail at: maciej.bak.pl@member.mensa.org
All terms and wages are always negotiated based on project's scope, complexity and timeframe.